Appsite template has two versions: one for J1.5 and second only for J2.5 , so after migration you should install a new version of template suited to your version of Joomla.
Jupgrade is not our extension, so you have to ask producers ( redcomponent.com/redcomponent/jupgrade). jUpgrade is a migration tool designed to assist administrators in moving the contents (not template) of their site into a new Joomla! 2.5 installation